BiMeta

Download source code here:

• Version 1.1: BiMeta1.1.tar.gz (updated date: 08/03/2015)
• Version 1.2: BiMeta1.2.tar.gz (updated date: 16/04/2015) (Support an additional function to separate output file into different files of different species)

Publication:

• Vinh, L. V., Lang, T. V., Binh, L. T., & Hoai, T. V. (2015). A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads. Algorithms for Molecular Biology, (1), 2 .

Datasets:

• The application was tested with various datasets. The datasets can be download here:
  • Short read datastets:
    • S1.fna.gz, S2.fna.gz, S3.fna.gz, S4.fna.gz, S5.fna.gz, S6.fna.gz, S7.fna.gz, S8.fna.gz, S9.fna.gz, S10.fna.gz, L1.fna.gz, L2.fna.gz, L3.fna.gz, L4.fna.gz, L5.fna.gz, L6.fna.gz
  • Long read datasets:
    • R1.fna.gz, R2.fna.gz, R3.fna.gz, R4.fna.gz, R5.fna.gz, R6.fna.gz, R7.fna.gz, R8.fna.gz, R9.fna.gz
  • Acid mine drainage:
    • http://www.ncbi.nlm.nih.gov/books/NBK6860/